JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF9_chr12_85795703_85841409	0/0	t0015	4207	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0016	4208	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0017	4208	3	0	0	0	1	2	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0018	4208	2	0	0	2	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0019	4209	2	2	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0020	4208	2	0	0	0	0	2	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0021	4208	1	0	0	0	0	1	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0022	4208	1	0	0	0	1	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0023	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0024	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0025	4208	1	0	0	0	0	1	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0026	4210	1	0	0	0	0	1	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0027	4208	1	0	0	0	1	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0028	4206	1	0	1	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0029	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0030	4208	1	0	0	1	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0031	4208	1	0	0	1	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0032	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0033	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0034	4208	1	0	0	1	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0035	4208	1	0	0	0	0	1	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0036	4208	1	0	1	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0037	4208	1	0	0	1	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0038	4206	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0039	4208	1	0	0	0	0	1	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0040	4151	1	0	0	1	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0041	4208	1	0	0	0	0	1	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0042	4208	1	0	0	1	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0043	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0044	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0045	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0046	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0047	4209	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0048	4208	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0049	4206	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RAVER1_chr19_10311212_10338529	1/1	t0001	1265	247	64	45	107	8	21	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0002	1266	102	16	21	52	5	8	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0003	1265	43	3	13	16	4	7	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0004	1267	13	0	0	13	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0005	1265	10	0	0	10	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0006	1265	7	0	4	0	1	2	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0007	1265	5	5	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0008	1265	2	2	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0009	1265	2	0	0	0	0	2	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0010	1265	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0011	1266	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0012	1265	1	0	0	0	0	1	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0013	1265	1	0	1	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0014	1265	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	t0015	1266	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529