JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAVER1_chr19_10311212_10338529	0/0	t0016	1265	1	0	0	0	0	1	copy fasta	RAVER1	chr19	10311212	10338529
RAVER2_chr1_64740075_64838232	0/1	t0001	2339	112	40	12	43	5	11	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	1/0	t0002	2346	108	6	21	61	5	14	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0003	2342	55	9	4	39	0	3	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0004	2343	16	0	11	1	2	2	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0005	2342	12	12	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0006	2346	8	1	3	0	2	2	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0007	2346	6	0	6	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0008	2341	6	6	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0009	2346	5	2	1	2	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0010	2350	4	0	0	4	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0011	2339	4	3	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0012	2339	3	3	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0013	2343	3	3	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0014	2339	3	3	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0015	2341	3	2	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0016	2339	2	0	2	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0017	2339	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0018	2343	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0019	2339	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0020	2346	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0021	2384	1	0	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0022	2346	1	0	0	0	0	1	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0023	2346	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0024	2346	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0025	2346	1	0	0	0	0	1	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0026	2361	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0027	2345	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0028	2342	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0029	2339	1	0	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	t0030	2339	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAX2_chr19_3764089_3777228	0/0	t0001	1867	258	29	40	149	10	30	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	1/0	t0002	1867	70	10	19	27	2	11	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/1	t0003	1867	33	4	15	4	3	6	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0004	1852	15	15	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0005	1867	8	7	1	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0006	1867	7	7	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0007	1863	5	5	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0008	1867	5	5	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0009	1857	3	3	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0010	1867	3	0	0	3	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0011	1863	3	3	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0012	1867	2	0	0	2	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0013	1867	2	0	0	2	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0014	1867	2	2	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0015	1867	2	2	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0016	1867	2	2	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0017	1867	2	0	0	0	2	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0018	1867	1	0	1	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0019	1867	1	0	1	0	0	0	copy fasta	RAX2	chr19	3764089	3777228