JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAX2_chr19_3764089_3777228	0/0	t0020	1867	1	0	1	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0021	1867	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0022	1867	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0023	1867	1	1	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0024	1867	1	0	0	0	0	1	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0025	1867	1	1	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0026	1867	1	1	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0027	1867	1	1	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0028	1867	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0029	1867	1	0	0	0	1	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0030	1867	1	1	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	t0031	1863	1	1	0	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX_chr18_59262038_59278454	1/0	t0001	2215	132	15	24	68	9	15	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/1	t0002	2215	62	4	15	37	0	5	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0003	2216	55	8	9	29	1	8	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0004	2213	49	14	9	15	2	9	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0005	2213	29	0	4	23	1	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0006	2214	26	7	5	12	1	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0007	2217	17	1	3	10	0	3	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0008	2214	15	4	3	7	0	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0009	2214	11	9	0	2	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0010	2216	10	1	0	7	0	2	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0011	2213	7	0	0	7	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0012	2213	5	4	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0013	2214	5	1	2	2	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0014	2214	4	4	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0015	2216	4	4	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0016	2213	4	1	0	3	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0017	2214	4	0	1	3	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0018	2214	3	1	2	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0019	2213	3	3	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0020	2215	3	3	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0021	2216	2	0	0	2	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0022	2213	2	2	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0023	2215	2	2	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0024	2217	2	2	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0025	2217	2	1	0	0	0	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0026	2215	2	0	0	0	2	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0027	2213	2	0	1	0	1	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0028	2216	2	0	0	1	0	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0029	2216	1	0	1	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0030	2215	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0031	2217	1	0	0	0	0	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0032	2213	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0033	2213	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0034	2215	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0035	2215	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0036	2217	1	0	1	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0037	2214	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0038	2215	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454