JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAX_chr18_59262038_59278454	0/0	t0039	2217	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0040	2214	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0041	2215	1	0	0	0	1	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0042	2215	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0043	2216	1	0	1	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0044	2216	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0045	2213	1	0	1	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0046	2216	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0047	2215	1	0	0	0	0	1	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	t0048	2213	1	0	0	0	0	1	copy fasta	RAX	chr18	59262038	59278454
RB1CC1_chr8_52617458_52719435	1/1	t0001	1852	196	39	50	74	9	22	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0002	1853	90	29	11	34	1	15	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0003	1852	4	3	1	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0004	1853	3	3	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0005	1852	2	2	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0006	1853	2	2	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0007	1852	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0008	1852	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0009	1852	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0010	1853	1	0	0	0	0	1	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0011	1853	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0012	1852	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0013	1852	1	0	0	0	0	1	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0014	1852	1	0	0	0	0	1	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	t0015	1852	1	1	0	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1_chr13_48298751_48486890	1/1	t0001	1982	285	74	49	128	6	26	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0002	1982	5	4	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0003	1982	4	3	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0004	1982	4	3	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0005	1982	4	4	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0006	1982	2	0	0	2	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0007	1982	1	1	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	t0008	1982	1	1	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RBAK_chr7_5040860_5074487	1/1	t0001	4468	122	6	28	60	7	19	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0002	4468	65	7	7	46	1	4	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0003	4468	45	0	2	42	0	1	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0004	4468	45	3	14	13	1	14	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0005	4468	18	6	7	0	4	1	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0006	4468	14	0	0	14	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0007	4466	12	6	5	0	1	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0008	4468	8	8	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0009	4466	6	4	2	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0010	4468	5	5	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0011	4468	5	5	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0012	4468	5	0	0	5	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0013	4468	5	5	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0014	4468	5	5	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0015	4468	4	3	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0016	4466	4	3	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0017	4468	4	4	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487