Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AVL9_chr7_32490489_32593726	0/0	t0102	5040	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0103	5040	1	0	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0104	5040	1	0	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0105	5039	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0106	5043	1	0	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0107	5043	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0108	5040	1	0	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0109	5043	1	0	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0110	5041	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0111	5041	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0112	5043	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0113	5042	1	0	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0114	5045	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0115	5043	1	0	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0116	5044	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0117	5038	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0118	5038	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0119	5038	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0120	5042	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0121	5037	1	0	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0122	5038	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0123	5038	1	0	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0124	5042	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0125	5038	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0126	5038	1	0	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0127	5038	1	0	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0128	5038	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0129	5040	1	0	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0130	5038	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0131	5041	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0132	5042	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0133	5039	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0134	5040	1	0	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0135	5041	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0136	5040	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0137	5040	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0138	5041	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0139	5042	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0140	5042	1	0	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0141	5042	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0142	5037	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0143	5039	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVPI1_chr10_97672424_97692241	0/0	t0001	944	261	76	38	117	8	22	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/1	t0002	944	179	19	43	82	10	24	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	1/0	t0003	932	2	1	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	t0004	944	1	0	1	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	t0005	944	1	1	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	t0006	944	1	1	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	t0007	944	1	0	0	1	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPR1A_chr12_63137759_63156201	1/0	t0001	4966	146	10	22	92	8	13	copy fasta	AVPR1A	chr12	63137759	63156201