JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBAK_chr7_5040860_5074487	0/0	t0068	4468	1	1	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	t0069	4468	1	0	0	0	1	0	copy fasta	RBAK	chr7	5040860	5074487
RBBP4_chr1_32646208_32691211	0/1	t0001	6611	104	3	23	56	10	11	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0002	6611	34	6	3	19	1	5	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0003	6611	31	21	4	0	3	3	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0004	6613	23	0	1	21	0	1	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0005	6607	17	16	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0006	6612	16	8	3	2	0	3	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0007	6614	12	0	9	3	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	1/0	t0008	6606	9	6	2	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0009	6612	5	1	2	2	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0010	6606	4	2	2	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0011	6607	4	3	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0012	6612	3	0	0	3	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0013	6607	2	2	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0014	6607	2	2	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0015	6608	2	2	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0016	6613	2	2	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0017	6612	2	2	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0018	6611	2	0	0	2	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0019	6611	2	0	0	2	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0020	6612	2	2	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0021	6606	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0022	6611	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0023	6612	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0024	6611	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0025	6614	1	0	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0026	6612	1	0	0	0	0	1	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0027	6611	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0028	6612	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0029	6610	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0030	6613	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0031	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0032	6610	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0033	6612	1	0	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0034	6611	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0035	6611	1	0	0	0	0	1	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0036	6613	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0037	6612	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0038	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0039	6611	1	0	0	0	0	1	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0040	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0041	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0042	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0043	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0044	6611	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0045	6612	1	0	0	0	0	1	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0046	6612	1	1	0	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0047	6612	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0048	6612	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211