JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBBP4_chr1_32646208_32691211	0/0	t0049	6613	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0050	6612	1	0	0	1	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0051	6611	1	0	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0052	6612	1	0	0	0	0	1	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0053	6615	1	0	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP4_chr1_32646208_32691211	0/0	t0054	6614	1	0	1	0	0	0	copy fasta	RBBP4	chr1	32646208	32691211
RBBP5_chr1_205081142_205126978	0/0	t0001	2751	76	3	19	40	3	11	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0002	2752	64	0	16	40	2	6	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/1	t0003	2751	40	5	16	9	4	5	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0004	2752	36	22	1	3	3	7	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0005	2749	34	25	2	7	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0006	2751	13	0	1	12	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	1/0	t0007	2751	11	1	3	0	1	5	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0008	2750	11	0	1	8	0	2	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0009	2751	8	0	0	8	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0010	2748	7	6	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0011	2750	6	0	1	5	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0012	2752	5	1	0	3	0	1	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0013	2749	4	4	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0014	2751	4	0	1	2	0	1	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0015	2753	4	0	0	4	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0016	2750	3	2	0	0	0	1	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0017	2750	3	2	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0018	2752	3	0	1	2	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0019	2752	3	0	0	3	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0020	2751	3	2	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0021	2749	3	0	2	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0022	2751	3	0	0	3	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0023	2753	3	0	0	2	0	1	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0024	2753	2	1	0	0	1	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0025	2753	2	1	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0026	2748	2	2	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0027	2748	2	0	0	2	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0028	2748	2	1	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0029	2751	2	0	0	2	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0030	2750	2	0	1	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0031	2753	2	1	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0032	2751	2	0	1	0	0	1	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0033	2750	2	2	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0034	2749	2	2	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0035	2751	2	0	0	2	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0036	2752	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0037	2751	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0038	2753	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0039	2747	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0040	2747	1	0	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0041	2750	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0042	2752	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0043	2750	1	0	1	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0044	2750	1	0	0	0	1	0	copy fasta	RBBP5	chr1	205081142	205126978