JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBBP5_chr1_205081142_205126978	0/0	t0045	2751	1	0	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0046	2751	1	0	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0047	2750	1	0	0	0	1	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0048	2750	1	0	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0049	2752	1	0	0	0	0	1	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0050	2749	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0051	2752	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0052	2752	1	1	0	0	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0053	2752	1	0	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP5_chr1_205081142_205126978	0/0	t0054	2750	1	0	0	1	0	0	copy fasta	RBBP5	chr1	205081142	205126978
RBBP6_chr16_24534566_24577863	0/1	t0001	1480	152	56	36	27	7	25	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	1/0	t0002	1480	84	4	8	64	1	6	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0003	1480	43	0	8	34	0	1	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0004	1480	34	6	9	8	4	7	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0005	1486	10	10	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0006	1480	4	4	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0007	1480	2	0	0	2	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0008	1480	2	0	0	2	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0009	1480	2	1	0	0	0	1	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0010	1480	1	0	1	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0011	1480	1	1	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	t0012	1480	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP7_chrX_16839341_16875362	0/1	t0001	1003	165	38	28	86	5	7	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	1/0	t0002	1004	94	21	21	38	3	10	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0003	1005	32	2	9	7	5	9	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0004	1004	8	8	0	0	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0005	1005	5	5	0	0	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0006	1004	2	0	0	0	0	2	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0007	1003	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0008	1004	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0009	1005	1	0	0	0	0	1	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0010	1006	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0011	1007	1	1	0	0	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0012	1003	1	1	0	0	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0013	1000	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0014	1002	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0015	1005	1	0	0	0	0	1	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	t0016	1008	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP8NL_chr20_62405237_62432539	1/1	t0001	805	268	27	50	161	6	22	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0002	805	79	16	19	20	9	15	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0003	805	19	9	4	0	0	6	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0004	805	7	7	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0005	805	7	6	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0006	805	6	5	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0007	805	6	5	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0008	805	4	4	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0009	805	4	0	4	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0010	805	3	3	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0011	805	3	3	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0012	805	3	3	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539