JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBBP8NL_chr20_62405237_62432539	0/0	t0013	805	3	3	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0014	805	3	0	0	0	0	3	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0015	805	2	1	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0016	805	2	2	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0017	805	2	0	0	2	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0018	805	2	0	0	1	1	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0019	805	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0020	805	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0021	805	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0022	805	1	0	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0023	805	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0024	805	1	0	0	0	0	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0025	805	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0026	805	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	t0027	805	1	0	0	0	0	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8_chr18_22928328_23031486	1/1	t0001	582	254	46	48	124	6	28	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0002	582	38	25	6	0	2	5	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0003	582	26	17	0	8	0	1	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0004	582	6	6	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0005	582	2	2	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0006	582	1	1	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0007	582	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0008	582	1	1	0	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	t0009	582	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP9_chr20_18481540_18502225	0/0	t0001	3285	94	9	11	63	5	6	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0002	3293	54	2	7	32	1	12	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0003	3287	51	0	9	33	3	6	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0004	3288	47	3	23	9	3	9	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0005	3287	43	7	3	24	2	7	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0006	3283	35	10	2	22	1	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0007	3283	17	0	10	7	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0008	3297	16	16	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0009	3285	12	12	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0010	3295	8	2	5	0	1	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0011	3288	6	5	1	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0012	3285	6	0	0	6	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0013	3288	6	5	1	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	1/0	t0014	3283	4	3	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0015	3283	3	0	0	3	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0016	3283	3	3	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0017	3285	3	3	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0018	3283	3	0	0	0	0	3	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0019	3283	3	3	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0020	3287	3	0	0	1	0	2	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0021	3285	3	0	2	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0022	3283	2	0	2	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0023	3287	2	0	0	2	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0024	3285	2	2	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0025	3287	2	0	0	2	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0026	3293	2	2	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225