JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBBP9_chr20_18481540_18502225	0/0	t0027	3285	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0028	3285	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0029	3287	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0030	3285	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0031	3293	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0032	3311	1	0	1	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0033	3287	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0034	3285	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0035	3285	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0036	3285	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0037	3286	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0038	3283	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0039	3283	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0040	3283	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0041	3284	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0042	3297	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0043	3293	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0044	3293	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0045	3293	1	0	0	0	0	1	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0046	3287	1	0	1	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0047	3287	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0048	3287	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	t0049	3287	1	0	0	1	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/1	t0050	3283	1	0	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBCK1_chr20_403299_437139	1/1	t0001	2169	168	31	23	97	2	13	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0002	2169	113	7	33	52	8	13	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0003	2169	104	31	8	53	2	10	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0004	2169	18	0	15	0	1	2	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0005	2169	7	7	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0006	2169	7	6	1	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0007	2169	6	5	1	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0008	2169	5	5	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0009	2169	4	0	1	0	0	3	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0010	2169	2	1	0	0	0	1	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0011	2169	2	1	1	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0012	2169	2	0	0	2	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0013	2169	2	0	0	0	1	1	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0014	2180	1	0	0	0	1	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0015	2169	1	0	0	0	0	1	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0016	2169	1	1	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0017	2169	1	1	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0018	2169	1	0	0	0	1	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0019	2169	1	0	1	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0020	2169	1	0	0	1	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0021	2169	1	0	1	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0022	2169	1	0	1	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0023	2169	1	1	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0024	2169	1	0	0	1	0	0	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	t0025	2169	1	1	0	0	0	0	copy fasta	RBCK1	chr20	403299	437139
RBFA_chr18_80029434_80055651	0/0	t0001	4558	93	5	18	60	1	9	copy fasta	RBFA	chr18	80029434	80055651