JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBFA_chr18_80029434_80055651	0/1	t0002	4558	67	3	10	44	3	6	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	1/0	t0003	4559	51	24	12	9	2	3	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0004	4562	44	0	13	26	3	2	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0005	4562	29	3	5	10	3	8	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0006	4562	13	10	2	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0007	4558	12	0	0	12	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0008	4559	11	0	0	10	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0009	4501	8	5	3	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0010	4632	5	5	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0011	4557	5	5	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0012	4562	4	1	1	0	0	2	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0013	4562	4	4	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0014	4619	3	0	0	0	0	3	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0015	4558	3	0	0	3	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0016	4559	2	2	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0017	4620	2	2	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0018	4620	2	2	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0019	4558	2	0	0	2	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0020	4562	2	0	1	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0021	4562	2	0	0	0	0	2	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0022	4558	2	0	0	2	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0023	4558	2	0	0	2	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0024	4622	2	2	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0025	4496	2	2	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0026	4558	2	0	0	2	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0027	4562	2	0	2	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0028	4559	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0029	4559	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0030	4559	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0031	4990	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0032	4559	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0033	4559	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0034	4562	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0035	4562	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0036	4623	1	0	1	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0037	4562	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0038	4559	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0039	4558	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0040	4558	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0041	4497	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0042	4497	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0043	4558	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0044	4558	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0045	4558	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0046	4558	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0047	4497	1	0	0	0	0	1	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0048	4558	1	0	1	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0049	4562	1	0	0	0	1	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0050	4497	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0051	4558	1	0	0	0	1	0	copy fasta	RBFA	chr18	80029434	80055651