JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBFA_chr18_80029434_80055651	0/0	t0052	4558	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0053	4562	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0054	4496	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0055	4705	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0056	4684	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0057	4684	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0058	4928	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0059	4684	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0060	4684	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0061	4558	1	0	1	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0062	4562	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0063	4562	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0064	4562	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	t0065	4559	1	1	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFOX1_chr16_6014024_7718340	0/0	t0001	3692	10	4	4	0	1	1	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0002	3691	9	1	2	0	1	5	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0003	3692	6	3	3	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0004	3688	3	2	0	0	0	1	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0005	3691	2	0	0	0	0	2	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0006	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0007	3692	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0008	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0009	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0010	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0011	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0012	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0013	3691	1	0	0	0	1	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0014	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0015	3692	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0016	3692	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0017	3690	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0018	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0019	3690	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0020	3691	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0021	3691	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0022	3689	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0023	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0024	3689	1	0	0	0	1	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0025	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0026	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0027	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0028	3692	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0029	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0030	3692	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0031	3691	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0032	3690	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0033	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0034	3691	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0035	3691	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0036	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340