JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBFOX1_chr16_6014024_7718340	0/0	t0037	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0038	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0039	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0040	3691	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0041	3692	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0042	3688	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	t0043	3690	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_7327845_7718340	0/1	t0001	2875	74	3	14	29	6	21	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0002	2876	38	14	12	2	2	8	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0003	2872	12	12	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0004	2872	10	4	3	0	0	3	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0005	2872	9	6	0	3	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0006	2873	8	0	3	5	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0007	2875	6	0	1	4	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0008	2876	5	1	2	0	1	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	1/0	t0009	2875	5	4	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0010	2876	3	0	0	2	1	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0011	2875	3	0	0	3	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0012	2874	3	0	0	3	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0013	2873	3	1	0	1	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0014	2875	3	0	0	3	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0015	2875	3	0	2	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0016	2873	3	0	0	0	1	2	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0017	2875	2	2	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0018	2874	2	1	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0019	2876	2	2	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0020	2876	2	2	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0021	2872	2	2	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0022	2876	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0023	2877	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0024	2876	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0025	2875	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0026	2875	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0027	2875	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0028	2875	1	0	0	0	1	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0029	2875	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0030	2875	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0031	2874	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0032	2874	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0033	2874	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0034	2876	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0035	2876	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0036	2876	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0037	2875	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0038	2875	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0039	2875	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0040	2873	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0041	2873	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0042	2873	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0043	2873	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340