JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBFOX1_chr16_7327845_7718340	0/0	t0044	2872	1	0	0	0	1	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0045	2873	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0046	2873	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0047	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0048	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0049	2873	1	0	0	0	1	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0050	2871	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0051	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0052	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0053	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0054	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0055	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0056	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	t0057	2872	1	1	0	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX2_chr22_35733736_36033824	1/1	t0001	5869	34	6	5	11	5	5	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0002	5869	15	15	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0003	5868	12	0	1	8	0	3	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0004	5869	10	9	1	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0005	5868	10	8	2	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0006	5869	10	9	1	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0007	5868	5	5	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0008	5869	4	3	0	0	1	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0009	5865	3	0	0	0	3	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0010	5868	2	2	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0011	5869	2	1	1	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0012	5868	2	2	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0013	5868	2	2	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0014	5869	1	1	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0015	5868	1	1	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0016	5868	1	1	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0017	5869	1	0	1	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0018	5868	1	1	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0019	5865	1	0	0	0	1	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0020	5868	1	1	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0021	5869	1	1	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	0/0	t0022	5869	1	0	0	1	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX3_chr17_79084345_79616051	0/0	t0001	2084	47	9	15	13	5	5	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	1/0	t0002	2084	20	11	1	6	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0003	2085	19	1	6	8	0	4	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0004	2085	19	17	2	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0005	2085	8	6	1	1	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0006	2084	8	7	0	1	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/1	t0007	2084	6	1	2	1	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0008	2084	4	3	1	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0009	2085	3	2	0	1	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0010	2084	2	0	1	0	1	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0011	2085	1	0	0	0	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0012	2085	1	0	1	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0013	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0014	2084	1	0	0	1	0	0	copy fasta	RBFOX3	chr17	79084345	79616051