Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AVPR1A_chr12_63137759_63156201	0/1	t0002	4966	61	12	17	23	2	6	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0003	4965	60	2	15	35	2	6	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0004	4965	30	0	0	21	0	9	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0005	4965	22	0	8	6	1	7	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0006	4965	13	0	0	13	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0007	4965	11	10	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0008	4965	8	8	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0009	4965	6	6	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0010	4965	6	6	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0011	4964	5	5	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0012	4965	5	5	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0013	4966	5	0	0	5	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0014	4966	5	5	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0015	4966	3	0	1	0	2	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0016	4965	3	0	2	0	1	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0017	4966	3	0	0	3	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0018	4966	3	1	0	2	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0019	4966	3	0	1	2	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0020	4964	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0021	4965	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0022	4967	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0023	4966	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0024	4966	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0025	4967	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0026	4967	2	0	1	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0027	4965	2	0	0	1	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0028	4966	2	0	0	2	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0029	4966	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0030	4965	2	2	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0031	4965	2	1	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0032	4965	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0033	4964	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0034	4966	1	0	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0035	4965	1	0	0	0	1	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0036	4966	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0037	4965	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0038	4966	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0039	4966	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0040	4966	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0041	4966	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0042	4965	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0043	4966	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0044	4967	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0045	4967	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0046	4967	1	0	0	0	1	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0047	4966	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0048	4965	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0049	4966	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0050	4966	1	0	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0051	4965	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201