JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBFOX3_chr17_79084345_79616051	0/0	t0015	2084	1	0	0	0	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0016	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0017	2084	1	0	0	1	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0018	2084	1	0	0	0	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0019	2085	1	0	0	0	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0020	2084	1	0	1	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0021	2084	1	0	1	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0022	2084	1	0	0	1	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0023	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0024	2084	1	0	0	0	0	1	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0025	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0026	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0027	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBFOX3_chr17_79084345_79616051	0/0	t0028	2084	1	1	0	0	0	0	copy fasta	RBFOX3	chr17	79084345	79616051
RBIS_chr8_85209048_85225374	1/1	t0001	585	364	92	66	150	14	40	copy fasta	RBIS	chr8	85209048	85225374
RBIS_chr8_85209048_85225374	0/0	t0002	585	3	0	0	3	0	0	copy fasta	RBIS	chr8	85209048	85225374
RBIS_chr8_85209048_85225374	0/0	t0003	585	1	0	0	1	0	0	copy fasta	RBIS	chr8	85209048	85225374
RBKS_chr2_27776379_27895387	1/1	t0001	279	266	76	38	120	4	26	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	t0002	279	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	t0003	279	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBL1_chr20_36991349_37100997	1/1	t0001	2480	175	49	28	64	10	22	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0002	2480	83	3	18	50	3	9	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0003	2480	19	0	4	13	0	2	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0004	2480	18	4	6	0	3	5	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0005	2481	15	0	7	8	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0006	2482	13	10	2	0	0	1	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0007	2482	4	0	0	4	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0008	2479	4	4	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0009	2480	3	3	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0010	2480	2	0	0	2	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0011	2479	2	2	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0012	2480	2	2	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0013	2480	2	0	2	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0014	2480	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0015	2440	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0016	2480	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0017	2480	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0018	2479	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0019	2480	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0020	2480	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0021	2480	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0022	2482	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0023	2482	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0024	2480	1	0	0	0	0	1	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	t0025	2480	1	0	1	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL2_chr16_53429471_53496648	1/0	t0001	1435	108	13	28	45	2	19	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	t0002	1435	73	31	10	17	4	11	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/1	t0003	1436	73	28	16	14	4	10	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	t0004	1436	16	16	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	t0005	1435	2	0	0	2	0	0	copy fasta	RBL2	chr16	53429471	53496648