JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBL2_chr16_53429471_53496648	0/0	t0006	1435	2	2	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	t0007	1435	1	1	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	t0008	1436	1	1	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBM10_chrX_47140221_47191813	1/1	t0001	605	191	49	32	81	7	20	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0002	605	24	20	4	0	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0003	605	5	3	2	0	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0004	606	1	0	0	0	0	1	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0005	607	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0006	606	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0007	605	1	0	0	0	0	1	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0008	605	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	t0009	605	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM11_chr21_14211157_14233372	1/0	t0001	1110	111	35	23	41	2	9	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/1	t0002	1110	91	2	16	70	0	2	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0003	1110	67	5	10	51	0	1	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0004	1110	62	22	8	14	6	12	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0005	1110	56	1	9	29	6	11	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0006	1110	34	2	7	12	2	11	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0007	1110	18	17	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0008	1110	6	5	0	0	0	1	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0009	1110	5	4	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0010	1110	3	0	0	0	2	1	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0011	1110	1	0	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0012	1110	1	1	0	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0013	1110	1	0	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0014	1110	1	0	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	t0015	1110	1	0	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM12B_chr8_93723155_93746009	1/0	t0001	5525	144	30	22	69	6	16	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/1	t0002	5527	121	19	24	66	4	7	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0003	5525	38	1	9	22	0	6	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0004	5522	13	13	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0005	5525	12	11	0	0	0	1	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0006	5521	6	0	5	0	1	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0007	5525	5	4	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0008	5525	5	0	5	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0009	5522	4	3	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0010	5525	3	0	0	0	0	3	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0011	5525	2	2	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0012	5525	2	0	2	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0013	5525	2	0	0	2	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0014	5527	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0015	5527	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0016	5525	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0017	5527	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0018	5527	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0019	5525	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0020	5525	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0021	5527	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0022	5527	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0023	5527	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009