JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM12B_chr8_93723155_93746009	0/0	t0024	5527	1	0	0	0	0	1	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0025	5527	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0026	5527	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0027	5527	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0028	5527	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0029	5527	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0030	5522	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0031	5522	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0032	5522	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0033	5525	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0034	5525	1	0	0	0	1	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0035	5525	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0036	5525	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0037	5525	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0038	5525	1	0	0	0	0	1	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0039	5521	1	0	1	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0040	5525	1	0	0	0	0	1	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0041	5525	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0042	5525	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0043	5525	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	t0044	5525	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12_chr20_35643925_35669900	1/1	t0001	3848	158	38	35	63	5	15	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0002	3848	72	20	12	36	1	3	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0003	3849	20	1	1	5	2	11	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0004	3848	9	4	3	0	1	1	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0005	3849	9	9	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0006	3848	5	0	0	5	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0007	3848	4	3	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0008	3848	4	0	0	4	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0009	3848	2	2	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0010	3848	2	2	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0011	3848	2	0	1	0	0	1	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0012	3848	2	0	1	0	1	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0013	3848	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0014	3848	1	0	0	0	1	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0015	3848	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0016	3848	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0017	3848	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0018	3848	1	0	0	0	0	1	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0019	3848	1	0	0	0	1	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0020	3848	1	0	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0021	3848	1	0	0	0	0	1	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0022	3848	1	0	0	1	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0023	3848	1	0	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0024	3848	1	0	0	1	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0025	3848	1	0	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0026	3848	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0027	3848	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0028	3849	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0029	3849	1	0	0	1	0	0	copy fasta	RBM12	chr20	35643925	35669900