JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM12_chr20_35643925_35669900	0/0	t0030	3849	1	0	0	0	0	1	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	t0031	3848	1	0	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM14_chr11_66611630_66634934	0/0	t0001	3363	129	13	23	68	5	20	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	1/1	t0002	3358	124	44	20	43	9	6	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0003	3360	92	14	4	69	1	4	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0004	3360	20	4	5	1	1	9	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0005	3360	6	5	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0006	3360	3	2	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0007	3361	3	0	3	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0008	3364	2	0	0	2	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0009	3363	2	0	0	0	0	2	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0010	3364	2	0	0	2	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0011	3360	2	2	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0012	3358	2	1	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0013	3363	1	0	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0014	3363	1	0	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0015	3358	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0016	3358	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0017	3358	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0018	3363	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0019	3363	1	0	0	0	0	1	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0020	3358	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0021	3358	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0022	3360	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0023	3363	1	0	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0024	3361	1	0	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0025	3361	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0026	3358	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0027	3363	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0028	3360	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0029	3360	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0030	3358	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0031	3363	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0032	3363	1	0	0	1	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	t0033	3358	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM15B_chr3_51386285_51402908	0/0	t0001	3952	141	35	21	60	6	19	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0002	3952	83	8	14	59	0	2	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0003	3952	60	6	8	33	2	11	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	1/1	t0004	3952	33	1	13	12	3	2	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0005	3952	9	7	2	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0006	3952	5	0	0	5	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0007	3952	5	1	2	0	2	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0008	3956	4	4	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0009	3952	4	0	0	4	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0010	3952	3	0	2	0	1	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0011	3952	3	3	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0012	3952	2	2	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0013	3952	2	0	2	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0014	3952	2	0	0	0	0	2	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0015	3948	2	2	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908