JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM15B_chr3_51386285_51402908	0/0	t0016	3952	2	0	0	2	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0017	3952	1	1	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0018	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0019	3952	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0020	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0021	3948	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0022	3952	1	0	1	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0023	3948	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0024	3956	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0025	3956	1	1	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0026	3952	1	1	0	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0027	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0028	3952	1	0	1	0	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0029	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0030	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0031	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0032	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0033	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	t0034	3952	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15_chr1_110334377_110351677	1/1	t0001	440	408	71	59	222	12	42	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	t0002	440	44	21	19	0	0	4	copy fasta	RBM15	chr1	110334377	110351677
RBM17_chr10_6084034_6122447	0/1	t0001	2066	88	6	11	54	8	8	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0002	2088	84	7	25	29	3	20	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0003	2067	40	24	7	0	3	6	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0004	2067	38	3	0	32	1	2	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0005	2068	35	6	6	21	0	2	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0006	2088	31	1	7	23	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0007	2090	25	7	9	8	1	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	1/0	t0008	2070	16	13	1	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0009	2067	13	0	0	13	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0010	2089	8	0	3	5	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0011	2067	6	4	0	1	0	1	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0012	2092	5	4	1	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0013	2067	5	0	2	0	0	3	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0014	2089	4	0	1	3	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0015	2088	4	4	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0016	2089	3	3	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0017	2068	3	3	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0018	2090	2	2	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0019	2090	2	0	2	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0020	2089	2	1	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0021	2066	2	0	2	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0022	2088	2	0	2	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0023	2090	2	0	0	2	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0024	2068	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0025	2067	1	1	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0026	2070	1	1	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0027	2070	1	1	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0028	2092	1	1	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0029	2092	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447