JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM17_chr10_6084034_6122447	0/0	t0030	2089	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0031	2089	1	1	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0032	2066	1	0	1	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0033	2068	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0034	2068	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0035	2067	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0036	2088	1	1	0	0	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM17_chr10_6084034_6122447	0/0	t0037	2083	1	0	0	1	0	0	copy fasta	RBM17	chr10	6084034	6122447
RBM18_chr9_122232622_122269840	0/0	t0001	4406	98	9	14	57	3	15	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0002	4405	79	14	20	26	8	11	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/1	t0003	4407	72	4	21	41	2	3	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0004	4405	16	0	0	16	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0005	4406	12	12	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0006	4405	11	11	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0007	4405	9	8	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0008	4407	9	0	7	0	1	1	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0009	4406	6	6	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0010	4406	6	1	3	0	0	2	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0011	4406	5	0	0	5	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0012	4405	5	4	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	1/0	t0013	4405	5	0	1	0	2	1	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0014	4405	4	4	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0015	4406	4	4	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0016	4405	3	0	1	0	2	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0017	4406	3	0	0	3	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0018	4406	3	0	0	0	0	3	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0019	4405	2	2	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0020	4406	2	0	0	2	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0021	4406	2	0	0	0	0	2	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0022	4407	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0023	4406	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0024	4406	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0025	4406	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0026	4405	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0027	4405	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0028	4407	1	0	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0029	4406	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0030	4406	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0031	4407	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0032	4408	1	0	0	0	0	1	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0033	4407	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0034	4406	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0035	4406	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0036	4406	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0037	4406	1	0	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0038	4406	1	0	0	0	0	1	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0039	4406	1	0	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0040	4405	1	0	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0041	4405	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0042	4405	1	0	0	0	0	1	copy fasta	RBM18	chr9	122232622	122269840