JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM18_chr9_122232622_122269840	0/0	t0043	4407	1	0	0	0	0	1	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0044	4406	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	t0045	4406	1	0	1	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM19_chr12_113817057_113971325	1/1	t0001	1266	145	53	27	40	10	13	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0002	1266	50	1	4	36	0	9	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0003	1269	45	5	14	23	2	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0004	1266	36	0	8	19	0	9	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0005	1266	34	4	5	19	2	4	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0006	1266	19	6	6	0	1	6	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0007	1266	11	11	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0008	1266	4	0	4	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0009	1266	3	1	1	0	1	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0010	1269	3	0	0	3	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0011	1269	3	3	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0012	1266	1	0	1	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0013	1269	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	t0014	1269	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM20_chr10_110639336_110844468	1/1	t0001	3610	135	42	28	39	7	17	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0002	3610	48	13	10	14	2	9	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0003	3610	29	4	3	21	1	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0004	3610	25	1	13	4	1	6	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0005	3610	5	5	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0006	3610	5	4	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0007	3610	5	2	1	2	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0008	3610	3	0	1	0	0	2	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0009	3610	2	0	1	0	1	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0010	3610	1	0	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0011	3610	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0012	3610	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0013	3610	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0014	3610	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0015	3610	1	0	0	0	1	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0016	3610	1	0	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0017	3610	1	0	0	0	1	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0018	3610	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0019	3610	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	t0020	3610	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM22_chr5_150685792_150706062	1/1	t0001	1037	307	62	61	125	18	39	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0002	1037	34	16	1	17	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0003	1037	13	0	0	13	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0004	1037	6	6	0	0	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0005	1037	4	4	0	0	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0006	1037	2	0	0	2	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0007	1037	1	1	0	0	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0008	1037	1	0	0	1	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0009	1037	1	1	0	0	0	0	copy fasta	RBM22	chr5	150685792	150706062
RBM22_chr5_150685792_150706062	0/0	t0010	1037	1	0	0	0	0	1	copy fasta	RBM22	chr5	150685792	150706062
RBM23_chr14_22888204_22924149	0/1	t0001	8687	118	4	31	64	5	13	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0002	8689	32	5	6	16	1	4	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0003	8689	27	10	6	8	1	2	copy fasta	RBM23	chr14	22888204	22924149