JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM23_chr14_22888204_22924149	0/0	t0054	8688	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0055	8687	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0056	8687	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0057	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0058	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0059	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0060	8687	1	0	0	0	0	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0061	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0062	8687	1	0	0	0	1	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0063	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0064	8687	1	0	0	0	0	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0065	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0066	8687	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0067	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0068	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0069	8690	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0070	8689	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0071	8689	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0072	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0073	8690	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0074	8688	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0075	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0076	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0077	8688	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0078	8689	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0079	8688	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0080	8688	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0081	8690	1	0	0	0	0	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0082	8688	1	0	0	0	0	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0083	8687	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0084	8689	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0085	8689	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0086	8689	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0087	8689	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0088	8689	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0089	8689	1	0	0	0	0	1	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0090	8689	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0091	8687	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	t0092	8687	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM24_chr6_17276361_17298871	1/1	t0001	1974	404	85	79	180	12	46	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0002	1977	26	4	1	20	0	1	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0003	1974	4	2	2	0	0	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0004	1972	3	1	0	0	2	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0005	1977	2	0	0	2	0	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0006	1974	1	0	1	0	0	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0007	1974	1	0	1	0	0	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	t0008	1974	1	0	0	0	0	1	copy fasta	RBM24	chr6	17276361	17298871
RBM25_chr14_73053534_73128899	0/0	t0001	4282	151	29	18	90	2	12	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/1	t0002	4282	59	5	19	24	4	6	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0003	4282	34	2	6	26	0	0	copy fasta	RBM25	chr14	73053534	73128899