JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM25_chr14_73053534_73128899	0/0	t0004	4282	28	2	13	5	1	7	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0005	4283	18	11	5	1	0	1	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0006	4281	16	2	1	10	0	3	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0007	4282	10	9	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0008	4283	8	0	2	2	2	2	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0009	4282	6	1	3	0	0	2	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0010	4282	6	6	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0011	4281	5	5	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0012	4282	5	0	3	0	0	2	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0013	4282	5	4	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0014	4282	3	0	0	3	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0015	4282	3	3	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0016	4283	3	0	0	3	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0017	4282	2	0	0	2	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0018	4282	2	2	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0019	4283	2	2	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0020	4282	1	0	0	1	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0021	4282	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0022	4282	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0023	4282	1	0	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0024	4282	1	0	0	0	1	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0025	4281	1	0	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0026	4282	1	0	0	1	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0027	4283	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0028	4281	1	0	0	1	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0029	4282	1	0	0	1	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	1/0	t0030	4282	1	0	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0031	4282	1	0	0	0	0	1	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0032	4282	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0033	4283	1	0	0	1	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0034	4283	1	0	0	0	0	1	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0035	4283	1	0	0	0	0	1	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0036	4282	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0037	4283	1	0	0	1	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0038	4283	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0039	4282	1	1	0	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0040	4282	1	0	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM25_chr14_73053534_73128899	0/0	t0041	4282	1	0	1	0	0	0	copy fasta	RBM25	chr14	73053534	73128899
RBM26_chr13_79313868_79411255	0/0	t0001	2234	83	12	15	31	5	20	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0002	2238	47	6	16	16	5	4	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/1	t0003	2235	46	24	9	8	1	3	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0004	2239	31	0	4	23	1	3	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0005	2238	26	0	6	14	2	4	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0006	2237	19	13	0	4	0	2	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0007	2237	12	0	1	10	0	1	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0008	2236	9	9	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0009	2239	8	0	3	5	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0010	2238	7	6	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	1/0	t0011	2235	5	3	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0012	2235	5	4	0	0	0	1	copy fasta	RBM26	chr13	79313868	79411255