Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AVPR1A_chr12_63137759_63156201	0/0	t0052	4964	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0053	4964	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0054	4966	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0055	4966	1	0	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0056	4965	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	t0057	4965	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1B_chr1_206101936_206122388	1/0	t0001	3752	171	11	30	104	8	17	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0002	3752	18	0	11	7	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/1	t0003	3757	15	0	5	8	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0004	3757	12	1	1	6	0	4	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0005	3752	11	0	3	8	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0006	3752	10	0	0	9	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0007	3757	8	7	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0008	3757	8	8	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0009	3752	6	0	3	2	1	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0010	3752	6	6	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0011	3754	6	0	4	0	1	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0012	3757	5	5	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0013	3752	5	1	2	0	1	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0014	3754	5	5	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0015	3757	4	0	0	4	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0016	3757	4	3	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0017	3754	4	4	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0018	3757	4	4	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0019	3752	4	0	0	0	2	2	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0020	3752	3	3	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0021	3754	3	3	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0022	3757	3	2	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0023	3752	3	3	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0024	3757	2	0	0	2	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0025	3754	2	2	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0026	3757	2	2	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0027	3757	2	2	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0028	3752	2	0	0	1	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0029	3752	2	0	0	2	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0030	3752	2	0	0	2	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0031	3752	2	0	2	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0032	3752	2	2	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0033	3752	2	0	0	2	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0034	3752	2	0	0	2	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0035	3752	2	0	0	2	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0036	3754	2	2	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0037	3757	2	0	0	0	0	2	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0038	3752	2	2	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0039	3752	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0040	3754	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0041	3754	1	0	0	0	1	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0042	3757	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0043	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0044	3757	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388