JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM26_chr13_79313868_79411255	0/0	t0013	2238	4	0	0	4	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0014	2236	4	4	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0015	2235	4	0	0	3	0	1	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0016	2236	3	3	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0017	2236	2	0	0	2	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0018	2238	2	1	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0019	2234	2	0	0	2	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0020	2236	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0021	2234	1	0	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0022	2235	1	0	0	0	0	1	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0023	2235	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0024	2238	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0025	2237	1	0	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0026	2234	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0027	2239	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	t0028	2238	1	0	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM27_chr5_146198605_146294223	1/0	t0001	3355	109	22	16	48	5	17	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/1	t0002	3355	73	0	18	42	3	9	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0003	3356	17	16	1	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0004	3355	16	6	3	0	2	5	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0005	3356	8	6	2	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0006	3355	7	6	1	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0007	3355	7	0	0	7	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0008	3355	4	0	4	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0009	3355	3	3	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0010	3355	3	0	0	3	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0011	3355	3	3	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0012	3355	2	1	1	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0013	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0014	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0015	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0016	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0017	3355	1	0	0	1	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0018	3355	1	0	0	0	0	1	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0019	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0020	3355	1	0	1	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0021	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0022	3355	1	0	0	1	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0023	3355	1	0	0	0	0	1	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0024	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0025	3355	1	0	0	1	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0026	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0027	3355	1	0	0	1	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0028	3355	1	0	1	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0029	3355	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0030	3355	1	0	0	0	0	1	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0031	3355	1	0	0	1	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	t0032	3355	1	0	0	1	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM28_chr7_128292685_128348908	0/0	t0001	13239	46	6	4	25	5	6	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0002	13236	36	0	8	23	2	3	copy fasta	RBM28	chr7	128292685	128348908