JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM28_chr7_128292685_128348908	0/0	t0003	13236	35	3	12	14	2	4	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0004	13239	23	0	0	22	0	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/1	t0005	13239	22	1	7	5	0	8	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0006	13240	8	8	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0007	13236	6	5	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0008	13240	6	0	1	5	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0009	13236	6	1	3	0	1	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0010	13238	5	0	0	5	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0011	13241	5	3	0	0	0	2	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0012	13236	5	0	4	0	0	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0013	13236	4	4	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	1/0	t0014	13228	4	3	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0015	13238	4	0	0	4	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0016	13234	4	1	2	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0017	13235	4	0	3	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0018	13238	3	1	1	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0019	13238	3	0	0	3	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0020	13239	3	0	2	0	0	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0021	13236	3	2	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0022	13240	3	0	0	3	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0023	13236	3	3	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0024	13236	3	0	0	3	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0025	13237	3	0	0	3	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0026	13236	3	0	0	3	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0027	13239	2	1	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0028	13234	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0029	13239	2	0	2	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0030	13228	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0031	13230	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0032	13228	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0033	13228	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0034	13239	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0035	13240	2	1	0	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0036	13239	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0037	13238	2	0	2	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0038	13239	2	1	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0039	13240	2	0	2	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0040	13239	2	0	1	0	0	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0041	13236	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0042	13230	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0043	13241	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0044	13235	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0045	13236	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0046	13236	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0047	13236	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0048	13236	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0049	13237	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0050	13236	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0051	13237	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	t0052	13235	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908