JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM33_chr7_155639661_155786480	0/0	t0120	6667	1	0	0	1	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	t0121	6684	1	0	0	1	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM34_chr1_235126183_235166250	1/1	t0001	555	338	66	64	160	13	33	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	t0002	555	39	20	10	5	0	4	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	t0003	555	4	1	1	0	1	1	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	t0004	555	2	2	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	t0005	555	2	1	1	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	t0006	555	2	0	0	2	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	t0007	555	1	0	0	1	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM38_chr20_57386396_57414333	0/1	t0001	1674	273	35	58	132	11	36	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0002	1674	38	16	10	1	4	7	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0003	1674	15	12	3	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0004	1674	13	12	1	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0005	1674	9	0	0	9	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0006	1674	7	0	4	0	2	1	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0007	1684	6	6	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0008	1674	6	0	0	6	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0009	1674	5	0	4	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0010	1674	5	5	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0011	1674	3	2	1	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0012	1674	2	2	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0013	1674	2	2	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0014	1674	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0015	1674	1	1	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0016	1678	1	0	0	0	1	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	1/0	t0017	1674	1	0	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0018	1684	1	0	0	0	0	1	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0019	1674	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0020	1658	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0021	1674	1	1	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0022	1674	1	0	1	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0023	1674	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0024	1674	1	0	1	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0025	1674	1	1	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0026	1674	1	0	0	0	0	1	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0027	1674	1	1	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0028	1674	1	0	1	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	t0029	1674	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM39_chr20_35696347_35747260	1/1	t0001	3468	128	34	26	46	7	13	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0002	3461	32	10	1	6	2	13	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0003	3462	31	8	5	13	2	3	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0004	3460	17	2	7	7	0	1	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0005	3463	14	1	0	13	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0006	3460	12	7	3	0	1	1	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0007	3438	10	9	1	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0008	3468	5	0	0	5	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0009	3458	4	2	2	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0010	3460	4	4	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0011	3468	3	3	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0012	3468	3	0	0	3	0	0	copy fasta	RBM39	chr20	35696347	35747260