JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM39_chr20_35696347_35747260	0/0	t0013	3468	2	2	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0014	3463	1	1	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0015	3461	1	0	0	0	0	1	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0016	3460	1	1	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0017	3460	1	0	0	1	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0018	3468	1	1	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0019	3468	1	0	0	1	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0020	3469	1	1	0	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0021	3468	1	0	1	0	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM39_chr20_35696347_35747260	0/0	t0022	3468	1	0	0	1	0	0	copy fasta	RBM39	chr20	35696347	35747260
RBM3_chrX_48569484_48586162	0/0	t0001	3827	64	10	9	39	1	5	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/1	t0002	3825	62	3	14	33	2	9	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0003	3826	28	3	7	14	2	2	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0004	3824	27	3	4	15	2	3	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0005	3826	15	12	3	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0006	3825	11	10	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0007	3826	10	5	1	1	1	2	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0008	3825	8	8	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0009	3817	6	0	0	6	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	1/0	t0010	3825	6	3	1	0	0	1	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0011	3824	4	3	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0012	3826	4	0	1	1	0	2	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0013	3827	4	0	2	0	1	1	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0014	3828	4	0	0	3	0	1	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0015	3827	4	4	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0016	3822	3	3	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0017	3824	3	2	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0018	3816	2	0	0	2	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0019	3824	2	0	1	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0020	3828	2	0	1	0	0	1	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0021	3826	2	0	0	2	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0022	3826	2	2	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0023	3828	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0024	3827	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0025	3826	1	0	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0026	3828	1	0	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0027	3825	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0028	3826	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0029	3826	1	0	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0030	3825	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0031	3825	1	0	0	0	0	1	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0032	3827	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0033	3827	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0034	3816	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0035	3829	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0036	3826	1	0	0	0	1	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0037	3827	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0038	3826	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0039	3827	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0040	3826	1	0	1	0	0	0	copy fasta	RBM3	chrX	48569484	48586162