JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM3_chrX_48569484_48586162	0/0	t0041	3827	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0042	3826	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0043	3827	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	t0044	3826	1	1	0	0	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM41_chrX_107056885_107123822	0/0	t0001	5691	105	4	24	62	4	11	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/1	t0002	5691	57	4	13	35	2	2	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0003	5691	17	1	2	14	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0004	5693	10	10	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0005	5690	8	8	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0006	5691	8	7	0	0	0	1	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0007	5691	8	0	0	8	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0008	5691	7	6	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0009	5691	7	0	3	0	1	3	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0010	5691	5	0	0	5	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0011	5691	4	0	0	4	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0012	5690	3	3	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0013	5690	3	3	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0014	5690	3	3	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0015	5690	2	2	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0016	5690	2	0	0	1	0	1	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0017	5692	2	2	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0018	5691	2	2	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0019	5692	2	0	0	2	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0020	5687	2	0	0	2	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0021	5693	2	2	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0022	5692	2	2	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0023	5690	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0024	5691	1	0	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0025	5690	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0026	5690	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0027	5690	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0028	5691	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0029	5691	1	0	0	1	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0030	5690	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0031	5691	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0032	5691	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0033	5690	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0034	5691	1	0	0	1	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0035	5694	1	0	0	1	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0036	5692	1	0	0	1	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0037	5691	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0038	5692	1	0	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0039	5691	1	0	0	0	0	1	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0040	5687	1	0	0	1	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0041	5691	1	0	0	0	0	1	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0042	5691	1	0	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0043	5691	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	1/0	t0044	5692	1	0	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0045	5691	1	0	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0046	5691	1	0	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822