JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM41_chrX_107056885_107123822	0/0	t0047	5688	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0048	5691	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0049	5694	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0050	5693	1	0	1	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM41_chrX_107056885_107123822	0/0	t0051	5692	1	1	0	0	0	0	copy fasta	RBM41	chrX	107056885	107123822
RBM42_chr19_35624036_35642685	1/1	t0001	250	410	80	83	188	15	42	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	t0002	250	9	8	1	0	0	0	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	t0003	250	5	5	0	0	0	0	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	t0004	250	2	1	0	0	1	0	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	t0005	250	2	2	0	0	0	0	copy fasta	RBM42	chr19	35624036	35642685
RBM43_chr2_151242940_151266863	0/0	t0001	3099	123	1	24	86	5	7	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/1	t0002	3102	110	1	32	60	5	11	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0003	3105	45	25	7	8	2	3	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0004	3104	13	1	0	11	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0005	3103	11	9	1	0	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0006	3104	10	0	0	8	1	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0007	3105	8	8	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0008	3106	8	6	2	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0009	3103	7	6	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0010	3103	4	4	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0011	3103	4	3	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0012	3104	3	3	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0013	3100	3	0	0	1	0	2	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0014	3103	3	1	2	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0015	3101	3	0	0	2	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0016	3103	3	0	0	2	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0017	3104	3	3	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0018	3100	3	0	0	3	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0019	3099	3	3	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0020	3106	2	0	0	0	0	2	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0021	3102	2	0	0	0	0	2	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0022	3102	2	0	2	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0023	3104	2	2	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0024	3105	2	0	2	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0025	3102	2	1	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0026	3104	2	2	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0027	3106	2	0	0	1	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0028	3102	2	2	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0029	3098	2	0	0	1	1	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0030	3104	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0031	3102	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0032	3100	1	0	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0033	3106	1	0	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0034	3102	1	0	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0035	3103	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0036	3103	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0037	3104	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0038	3103	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0039	3106	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0040	3105	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863