Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AVPR1B_chr1_206101936_206122388	0/0	t0045	3757	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0046	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0047	3757	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0048	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0049	3757	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0050	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0051	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0052	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0053	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0054	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0055	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0056	3757	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0057	3752	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0058	3752	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0059	3752	1	0	0	0	1	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0060	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0061	3752	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0062	3752	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0063	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0064	3752	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0065	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0066	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0067	3752	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0068	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0069	3752	1	0	0	0	1	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0070	3752	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0071	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0072	3737	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0073	3754	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0074	3754	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0075	3752	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0076	3752	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0077	3754	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0078	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0079	3757	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0080	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0081	3754	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0082	3754	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0083	3757	1	0	0	0	0	1	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0084	3757	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0085	3752	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	t0086	3752	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR2_chrX_153899673_153912166	0/1	t0001	711	306	71	52	139	11	32	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0002	711	4	4	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0003	711	2	2	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0004	711	2	0	2	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0005	713	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	1/0	t0006	710	1	0	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0007	712	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0008	699	1	1	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166