JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM43_chr2_151242940_151266863	0/0	t0041	3105	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0042	3102	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0043	3103	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0044	3102	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0045	3102	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0046	3105	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0047	3107	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0048	3104	1	1	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0049	3102	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0050	3099	1	0	0	0	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0051	3099	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	1/0	t0052	3103	1	0	0	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0053	3099	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0054	3102	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0055	3100	1	0	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0056	3100	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0057	3098	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0058	3099	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0059	3099	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0060	3100	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0061	3099	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	t0062	3099	1	0	0	1	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM44_chr2_237793779_237847805	1/1	t0001	1091	222	48	42	91	12	27	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0002	1091	89	0	11	65	1	12	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0003	1091	22	19	3	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0004	1091	17	0	1	11	2	3	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0005	1091	8	3	0	3	1	1	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0006	1091	5	5	0	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0007	1091	5	0	1	3	0	1	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0008	1091	5	1	2	2	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0009	1091	3	3	0	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0010	1091	1	0	0	1	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	t0011	1091	1	1	0	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM45_chr2_178107437_178134656	1/1	t0001	379	361	94	62	136	17	50	copy fasta	RBM45	chr2	178107437	178134656
RBM45_chr2_178107437_178134656	0/0	t0002	379	2	0	2	0	0	0	copy fasta	RBM45	chr2	178107437	178134656
RBM45_chr2_178107437_178134656	0/0	t0003	379	1	0	0	0	1	0	copy fasta	RBM45	chr2	178107437	178134656
RBM46_chr4_154776272_154833813	0/0	t0001	922	149	41	16	80	4	8	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0002	922	111	9	18	69	2	13	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	1/1	t0003	923	67	6	17	20	6	16	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0004	923	17	17	0	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0005	921	15	12	3	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0006	922	3	3	0	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0007	923	2	1	0	1	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0008	923	2	2	0	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0009	921	2	2	0	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0010	922	1	0	0	1	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0011	923	1	0	1	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0012	923	1	0	0	1	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0013	923	1	0	1	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	t0014	923	1	0	0	0	0	1	copy fasta	RBM46	chr4	154776272	154833813