JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM46_chr4_154776272_154833813	0/0	t0015	922	1	1	0	0	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM47_chr4_40418280_40634864	0/0	t0001	3294	16	4	4	7	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0002	3319	8	0	1	7	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0003	3311	8	5	0	3	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0004	3315	7	3	0	4	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0005	3319	7	4	1	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0006	3320	7	2	2	3	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0007	3294	6	1	3	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0008	3304	6	6	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0009	3319	6	2	1	3	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0010	3328	5	1	2	0	0	2	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0011	3306	5	4	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0012	3323	5	3	1	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0013	3328	5	1	0	2	0	2	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0014	3311	4	0	0	4	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0015	3325	4	1	1	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0016	3325	4	3	0	0	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0017	3323	3	0	0	2	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0018	3320	3	0	1	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/1	t0019	3324	3	0	1	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	1/0	t0020	3333	3	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0021	3337	3	0	0	3	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0022	3333	3	0	0	0	0	3	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0023	3324	3	2	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0024	3320	3	3	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0025	3324	3	3	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0026	3327	3	0	1	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0027	3294	3	1	0	1	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0028	3311	3	0	0	3	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0029	3324	3	1	2	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0030	3332	2	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0031	3332	2	0	0	0	0	2	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0032	3337	2	0	2	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0033	3321	2	0	2	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0034	3329	2	0	1	0	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0035	3333	2	0	1	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0036	3322	2	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0037	3328	2	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0038	3323	2	2	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0039	3312	2	1	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0040	3324	2	1	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0041	3332	2	0	1	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0042	3329	2	1	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0043	3333	2	1	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0044	3320	2	0	1	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0045	3333	2	1	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0046	3322	2	1	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0047	3328	2	0	0	1	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0048	3324	2	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0049	3321	2	0	2	0	0	0	copy fasta	RBM47	chr4	40418280	40634864