JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM47_chr4_40418280_40634864	0/0	t0050	3329	2	0	0	2	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0051	3317	2	0	2	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0052	3320	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0053	3315	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0054	3327	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0055	3312	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0056	3324	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0057	3332	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0058	3336	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0059	3324	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0060	3328	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0061	3329	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0062	3341	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0063	3324	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0064	3321	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0065	3325	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0066	3329	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0067	3318	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0068	3326	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0069	3330	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0070	3324	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0071	3329	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0072	3337	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0073	3341	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0074	3315	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0075	3315	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0076	3331	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0077	3343	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0078	3327	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0079	3304	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0080	3328	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0081	3340	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0082	3302	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0083	3308	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0084	3328	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0085	3332	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0086	3307	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0087	3321	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0088	3311	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0089	3308	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0090	3336	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0091	3327	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0092	3320	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0093	3321	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0094	3312	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0095	3316	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0096	3324	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0097	3317	1	0	0	0	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0098	3321	1	0	0	0	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0099	3329	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864