JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM47_chr4_40418280_40634864	0/0	t0100	3325	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0101	3322	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0102	3326	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0103	3330	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0104	3320	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0105	3332	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0106	3316	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0107	3329	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0108	3328	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0109	3320	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0110	3316	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0111	3315	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0112	3294	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0113	3315	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0114	3323	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0115	3316	1	0	0	0	1	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0116	3320	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0117	3332	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0118	3325	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0119	3325	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0120	3330	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0121	3324	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0122	3324	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0123	3302	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0124	3320	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0125	3332	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0126	3307	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0127	3315	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0128	3323	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0129	3320	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0130	3328	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0131	3332	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0132	3328	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0133	3324	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0134	3312	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0135	3329	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0136	3322	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0137	3322	1	0	1	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0138	3324	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0139	3332	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0140	3324	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0141	3290	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0142	3294	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	t0143	3324	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM48_chr7_92523795_92545481	1/1	t0001	3564	230	29	39	124	7	29	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0002	3564	51	3	4	42	1	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0003	3564	19	0	6	10	2	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0004	3564	19	12	0	6	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0005	3564	11	0	0	11	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0006	3564	10	2	1	1	1	5	copy fasta	RBM48	chr7	92523795	92545481