JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM48_chr7_92523795_92545481	0/0	t0007	3564	10	10	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0008	3564	7	7	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0009	3564	6	6	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0010	3564	4	0	4	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0011	3564	4	0	1	0	2	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0012	3564	3	3	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0013	3564	3	0	0	0	0	3	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0014	3564	2	2	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0015	3564	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0016	3564	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0017	3564	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0018	3564	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0019	3579	1	0	0	0	1	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0020	3577	1	0	0	1	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0021	3564	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0022	3564	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0023	3564	1	0	0	1	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0024	3564	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0025	3564	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0026	3564	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0027	3564	1	0	0	1	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0028	3564	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0029	3564	1	0	1	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0030	3561	1	0	0	1	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	t0031	3564	1	1	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM4B_chr11_66659998_66682887	1/1	t0001	727	390	94	54	187	18	35	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	t0002	727	3	1	1	1	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	t0003	727	1	0	0	0	0	1	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	t0004	727	1	0	0	1	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	t0005	727	1	0	0	1	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	t0006	727	1	0	1	0	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	t0007	727	1	1	0	0	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4_chr11_66633703_66651468	1/1	t0001	513	392	90	68	183	14	35	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	t0002	513	7	0	0	7	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	t0003	506	3	2	0	1	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	t0004	513	2	2	0	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	t0005	513	1	0	0	1	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	t0006	513	1	0	0	0	0	1	copy fasta	RBM4	chr11	66633703	66651468
RBM5_chr3_50083919_50124021	1/1	t0001	730	284	86	54	98	18	26	copy fasta	RBM5	chr3	50083919	50124021
RBM6_chr3_49935150_50082249	1/1	t0001	259	216	90	47	50	12	15	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	t0002	259	1	0	1	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	t0003	259	1	0	0	0	0	1	copy fasta	RBM6	chr3	49935150	50082249
RBM7_chr11_114395666_114415607	1/1	t0001	2807	136	5	27	77	5	20	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0002	2812	115	20	14	69	3	9	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0003	2807	55	19	13	21	0	2	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0004	2812	15	0	9	0	0	6	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0005	2807	14	12	2	0	0	0	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0006	2812	6	3	1	0	1	1	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0007	2807	6	6	0	0	0	0	copy fasta	RBM7	chr11	114395666	114415607
RBM7_chr11_114395666_114415607	0/0	t0008	2812	5	0	0	4	0	1	copy fasta	RBM7	chr11	114395666	114415607