JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBM8A_chr1_145916556_145932484	0/0	t0018	4386	2	2	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0019	4386	2	0	2	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0020	4385	1	1	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0021	4385	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0022	4351	1	1	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0023	4385	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0024	4384	1	1	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0025	4384	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0026	4385	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0027	4385	1	1	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0028	4385	1	0	0	0	0	1	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0029	4386	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0030	4386	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0031	4386	1	0	1	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0032	4385	1	0	0	0	0	1	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0033	4385	1	0	0	0	0	1	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0034	4385	1	0	1	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0035	4384	1	1	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0036	4385	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0037	4386	1	0	0	0	0	1	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0038	4405	1	0	0	1	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0039	4385	1	0	0	0	0	1	copy fasta	RBM8A	chr1	145916556	145932484
RBM8A_chr1_145916556_145932484	0/0	t0040	4385	1	1	0	0	0	0	copy fasta	RBM8A	chr1	145916556	145932484
RBMS1_chr2_160267151_160498807	0/0	t0001	3066	93	13	24	40	4	12	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	1/0	t0002	3066	62	21	12	21	2	5	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/1	t0003	3062	55	1	3	47	0	3	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0004	3067	31	5	20	3	2	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0005	3069	17	1	1	8	3	4	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0006	3069	11	0	4	2	2	3	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0007	3067	8	7	1	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0008	3065	7	7	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0009	3033	5	5	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0010	3073	5	5	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0011	3061	4	0	3	0	0	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0012	3065	3	0	0	2	0	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0013	3064	2	2	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0014	3066	2	1	0	0	1	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0015	3066	2	2	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0016	3066	2	1	1	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0017	3070	2	0	0	0	2	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0018	3103	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0019	3058	1	0	0	0	0	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0020	3062	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0021	3067	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0022	3063	1	0	0	1	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0023	3067	1	0	0	0	0	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0024	3066	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0025	3067	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0026	3066	1	0	0	0	0	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0027	3065	1	0	0	1	0	0	copy fasta	RBMS1	chr2	160267151	160498807