JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBMS1_chr2_160267151_160498807	0/0	t0028	3066	1	0	0	0	0	1	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0029	3046	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0030	3066	1	0	1	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0031	3069	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0032	3070	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0033	3072	1	1	0	0	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS1_chr2_160267151_160498807	0/0	t0034	3039	1	0	0	1	0	0	copy fasta	RBMS1	chr2	160267151	160498807
RBMS2_chr12_56516820_56601193	0/0	t0001	7264	62	3	17	29	4	9	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0002	7265	37	4	8	20	2	3	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0003	7264	35	4	7	19	3	2	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0004	7264	7	7	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0005	7264	5	5	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0006	7264	5	5	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0007	7264	5	5	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0008	7264	4	0	0	1	0	3	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0009	7264	4	0	3	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0010	7262	4	4	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0011	7262	4	4	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0012	7264	4	4	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0013	7264	3	3	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0014	7265	3	0	0	0	0	3	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0015	7265	3	1	2	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0016	7264	3	0	0	1	0	2	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0017	7264	3	3	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0018	7264	3	1	2	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0019	7264	3	0	1	2	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0020	7262	3	3	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0021	7262	3	2	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0022	7261	3	0	0	0	3	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0023	7255	2	2	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0024	7265	2	0	0	2	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0025	7265	2	0	0	2	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0026	7264	2	2	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0027	7264	2	0	2	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0028	7264	2	0	0	2	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0029	7264	2	0	0	2	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0030	7265	2	1	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0031	7264	2	0	2	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0032	7265	2	0	0	1	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0033	7264	2	2	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0034	7254	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0035	7252	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0036	7254	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0037	7254	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0038	7264	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0039	7265	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0040	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0041	7265	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0042	7265	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0043	7262	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193