JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBMS2_chr12_56516820_56601193	0/0	t0044	7264	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0045	7265	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0046	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0047	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0048	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0049	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0050	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0051	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0052	7262	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0053	7265	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0054	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0055	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0056	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0057	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0058	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0059	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0060	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0061	7264	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0062	7264	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0063	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0064	7264	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0065	7265	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0066	7264	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/1	t0067	7264	1	0	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0068	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0069	7264	1	0	0	1	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0070	7264	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0071	7264	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0072	7265	1	0	0	0	0	1	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0073	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0074	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0075	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0076	7264	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0077	7264	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	1/0	t0078	7265	1	0	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0079	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0080	7254	1	0	1	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0081	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0082	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0083	7262	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0084	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS2_chr12_56516820_56601193	0/0	t0085	7264	1	1	0	0	0	0	copy fasta	RBMS2	chr12	56516820	56601193
RBMS3_chr3_29276071_30015386	0/0	t0001	7135	4	0	0	3	0	1	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0002	7140	4	3	1	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0003	7135	3	3	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0004	7139	3	0	3	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0005	7144	3	0	0	2	0	1	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0006	7140	3	0	1	0	1	1	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0007	7137	2	2	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0008	7136	2	1	0	0	0	1	copy fasta	RBMS3	chr3	29276071	30015386