Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AVPR2_chrX_153899673_153912166	0/0	t0009	707	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0010	710	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0011	712	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	t0012	713	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVP_chr20_3077556_3089724	1/1	t0001	125	465	95	86	218	16	48	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	t0002	125	2	0	0	2	0	0	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	t0003	99	1	1	0	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AWAT1_chrX_70229655_70245659	1/1	t0001	411	288	76	55	119	13	23	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	t0002	411	25	0	0	19	0	6	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	t0003	411	1	0	0	0	0	1	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	t0004	411	1	0	0	1	0	0	copy fasta	AWAT1	chrX	70229655	70245659
AWAT2_chrX_70035542_70054938	1/1	t0001	1123	258	76	40	108	7	25	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0002	1123	64	0	12	43	3	6	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0003	1123	7	0	5	0	2	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0004	1123	2	0	1	0	0	1	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0005	1123	2	2	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0006	1121	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0007	1123	1	0	1	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0008	1110	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0009	1123	1	1	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	t0010	1123	1	1	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AXDND1_chr1_179360971_179559735	1/1	t0001	353	356	90	66	158	14	26	copy fasta	AXDND1	chr1	179360971	179559735
AXIN1_chr16_282440_357723	0/1	t0001	1118	203	34	40	92	6	30	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0002	1118	21	0	4	4	4	9	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0003	1115	19	15	1	3	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0004	1116	15	5	3	7	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0005	1119	11	0	0	8	0	3	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0006	1118	10	0	2	7	1	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0007	1116	8	0	5	0	1	2	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0008	1115	7	7	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0009	1118	7	0	6	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0010	1118	6	0	0	5	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0011	1115	6	0	2	3	1	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0012	1116	6	6	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0013	1118	5	4	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0014	1115	4	4	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0015	1101	3	0	0	0	0	3	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0016	1118	3	0	1	0	2	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0017	1119	2	0	0	2	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0018	1116	2	2	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0019	1118	2	0	2	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0020	1116	2	0	1	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0021	1115	2	1	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0022	1115	2	2	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0023	1114	2	2	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0024	1118	2	0	1	0	1	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0025	1118	2	2	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0026	1116	2	0	2	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0027	1115	2	1	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0028	1116	1	0	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723