JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBMS3_chr3_29276071_30015386	0/0	t0059	7139	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0060	7138	1	0	0	0	1	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0061	7138	1	0	0	1	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0062	7138	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0063	7139	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0064	7140	1	0	0	0	1	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0065	7140	1	0	0	0	0	1	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0066	7140	1	0	0	0	1	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0067	7139	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0068	7139	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0069	7140	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0070	7139	1	0	1	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0071	7146	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0072	7145	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0073	7140	1	0	1	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0074	7140	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0075	7145	1	0	1	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0076	7140	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0077	7145	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0078	7141	1	0	1	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0079	7148	1	0	0	0	0	1	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0080	7154	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0081	7155	1	0	0	0	0	1	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0082	7148	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0083	7156	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/1	t0084	7149	1	0	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0085	7154	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	t0086	7151	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMX2_chrX_130396987_130418656	1/1	t0001	855	268	43	55	131	11	26	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0002	855	19	18	1	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0003	855	10	9	1	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0004	855	2	1	1	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0005	855	2	0	0	2	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0006	853	1	1	0	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0007	856	1	0	0	1	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0008	855	1	0	1	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	t0009	855	1	0	0	1	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMXL1_chr1_88974456_88997629	1/1	t0001	3584	183	19	36	83	9	34	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0002	3584	92	0	26	54	7	5	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0003	3583	30	28	2	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0004	3584	27	4	8	15	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0005	3583	11	11	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0006	3584	11	10	1	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0007	3583	9	0	0	9	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0008	3584	7	0	1	6	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0009	3583	6	0	0	6	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0010	3584	5	5	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0011	3584	4	0	0	4	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0012	3583	4	4	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0013	3584	3	0	3	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629