JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBMXL1_chr1_88974456_88997629	0/0	t0014	3584	2	2	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0015	3584	2	2	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0016	3585	2	0	1	0	0	1	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0017	3585	2	0	0	2	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0018	3584	2	2	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0019	3584	2	2	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0020	3583	2	0	0	2	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0021	3583	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0022	3583	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0023	3584	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0024	3584	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0025	3584	1	0	1	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0026	3584	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0027	3583	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0028	3584	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0029	3584	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0030	3584	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0031	3584	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0032	3584	1	0	0	0	0	1	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0033	3585	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0034	3585	1	0	1	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0035	3584	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0036	3584	1	0	0	0	0	1	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0037	3584	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0038	3584	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0039	3583	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	t0040	3584	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL2_chr11_7083998_7096148	1/1	t0001	973	287	52	45	155	7	26	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0002	973	61	29	16	5	4	7	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0003	973	56	10	3	35	1	7	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0004	970	44	4	13	22	2	3	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0005	973	2	2	0	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0006	970	2	1	0	0	0	1	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0007	973	1	0	0	0	1	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0008	973	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0009	961	1	0	0	0	1	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0010	973	1	0	0	0	0	1	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0011	973	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0012	970	1	0	1	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0013	973	1	0	0	0	0	1	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	t0014	973	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL3_chrX_115184410_115197868	1/1	t0001	256	313	79	54	140	9	29	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	t0002	256	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMX_chrX_136868461_136885725	0/1	t0001	837	197	49	30	95	7	15	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	1/0	t0002	837	90	24	14	32	4	15	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0003	838	3	0	0	2	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0004	836	3	0	2	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0005	837	2	2	0	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0006	837	2	0	0	2	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	t0007	837	2	1	1	0	0	0	copy fasta	RBMX	chrX	136868461	136885725