JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBP7_chr1_9992228_10021021	0/0	t0004	221	1	1	0	0	0	0	copy fasta	RBP7	chr1	9992228	10021021
RBPJL_chr20_45301840_45322824	0/1	t0001	949	395	88	65	186	11	44	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0002	949	16	0	6	10	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0003	949	11	0	7	0	4	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0004	949	6	6	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	1/0	t0005	949	4	0	0	0	3	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0006	950	4	0	0	4	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0007	949	3	3	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0008	949	2	0	0	2	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0009	949	1	0	0	1	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0010	949	1	0	0	1	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0011	949	1	1	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0012	949	1	0	1	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	t0013	949	1	0	1	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJ_chr4_26316014_26439923	0/0	t0001	3932	181	42	32	73	9	25	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0002	3932	57	10	3	41	1	2	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/1	t0003	3933	21	5	1	7	1	6	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0004	3931	12	2	3	7	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0005	3932	6	0	3	0	2	1	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0006	3931	4	4	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0007	3934	4	4	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0008	3932	3	3	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0009	3931	2	2	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0010	3934	2	1	1	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0011	3932	2	0	0	0	0	2	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	1/0	t0012	3932	2	0	1	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0013	3932	2	0	0	2	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0014	3931	1	0	1	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0015	3933	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0016	3932	1	0	0	0	0	1	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0017	3932	1	0	0	0	0	1	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0018	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0019	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0020	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0021	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0022	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0023	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0024	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0025	3932	1	1	0	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0026	3932	1	0	0	0	1	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0027	3932	1	0	0	1	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0028	3932	1	0	0	1	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0029	3932	1	0	0	1	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0030	3931	1	0	0	1	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPJ_chr4_26316014_26439923	0/0	t0031	3934	1	0	1	0	0	0	copy fasta	RBPJ	chr4	26316014	26439923
RBPMS2_chr15_64734891_64780589	1/1	t0001	1388	183	56	33	48	13	31	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0002	1389	44	24	6	1	2	11	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0003	1389	6	6	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0004	1389	5	5	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0005	1388	4	0	4	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589