JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBPMS2_chr15_64734891_64780589	0/0	t0006	1388	1	1	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0007	1388	1	0	0	1	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0008	1388	1	0	0	0	0	1	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0009	1389	1	1	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0010	1388	1	0	0	0	0	1	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0011	1388	1	0	0	0	1	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0012	1388	1	0	1	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0013	1389	1	0	1	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0014	1388	1	1	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	t0015	1388	1	0	1	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS_chr8_30379541_30577256	1/1	t0001	2284	129	29	30	42	6	20	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0002	2284	63	12	5	38	2	6	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0003	2284	37	3	7	24	1	2	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0004	2284	16	13	0	2	0	1	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0005	2284	13	1	8	4	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0006	2284	6	3	1	1	0	1	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0007	2288	6	2	0	1	1	2	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0008	2288	5	0	0	4	0	1	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0009	2297	4	0	0	4	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0010	2284	4	3	1	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0011	2285	3	2	0	1	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0012	2284	3	0	3	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0013	2312	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0014	2284	1	0	1	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0015	2284	1	0	0	0	0	1	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0016	2297	1	0	0	1	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0017	2312	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0018	2284	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0019	2284	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0020	2284	1	0	0	0	0	1	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0021	2284	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0022	2284	1	0	0	0	0	1	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0023	2285	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0024	2284	1	0	0	1	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0025	2284	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0026	2284	1	1	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	t0027	2284	1	0	0	1	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBSN_chr3_15065073_15104148	1/1	t0001	4324	184	29	40	88	7	18	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0002	4324	47	8	12	22	1	4	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0003	4324	26	24	2	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0004	4324	22	0	7	12	0	3	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0005	4325	17	0	2	10	1	4	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0006	4326	16	6	1	0	5	4	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0007	4325	13	13	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0008	4324	4	0	2	2	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0009	4324	3	0	0	0	0	3	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0010	4324	3	0	0	3	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0011	4324	2	2	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0012	4324	2	0	0	2	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0013	4324	2	1	1	0	0	0	copy fasta	RBSN	chr3	15065073	15104148