JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RBSN_chr3_15065073_15104148	0/0	t0014	4324	2	0	0	2	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0015	4325	2	2	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0016	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0017	4324	1	0	0	1	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0018	4326	1	0	1	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0019	4324	1	0	0	1	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0020	4326	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0021	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0022	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0023	4324	1	0	0	1	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0024	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0025	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0026	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0027	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0028	4324	1	0	1	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0029	4324	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	t0030	4324	1	0	1	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBX1_chr22_40946378_40978309	1/1	t0001	843	198	82	33	47	8	26	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0002	843	92	6	18	43	8	17	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0003	843	19	0	0	18	0	1	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0004	843	5	5	0	0	0	0	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0005	843	3	0	0	3	0	0	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0006	843	1	0	1	0	0	0	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0007	843	1	1	0	0	0	0	copy fasta	RBX1	chr22	40946378	40978309
RBX1_chr22_40946378_40978309	0/0	t0008	843	1	0	0	1	0	0	copy fasta	RBX1	chr22	40946378	40978309
RC3H1_chr1_173926084_174027357	0/1	t0001	8033	38	0	4	30	1	2	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	1/0	t0002	8050	20	1	6	11	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0003	8042	13	3	1	7	1	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0004	8048	11	0	3	5	0	3	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0005	8028	8	8	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0006	8045	7	0	0	7	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0007	8051	6	0	0	5	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0008	8033	5	5	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0009	8032	5	5	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0010	8047	5	0	0	4	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0011	8048	5	0	2	3	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0012	8040	5	0	1	1	3	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0013	8039	5	1	4	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0014	8039	5	0	0	5	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0015	8034	4	0	0	0	0	4	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0016	8032	4	4	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0017	8049	4	0	2	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0018	8039	3	0	2	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0019	8041	3	0	0	3	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0020	8050	3	0	1	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0021	8042	3	0	2	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0022	8041	3	1	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0023	8043	3	0	0	3	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0024	8031	3	1	2	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0025	8029	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357