JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RC3H1_chr1_173926084_174027357	0/0	t0026	8031	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0027	8032	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0028	8034	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0029	8035	2	0	0	1	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0030	8036	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0031	8029	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0032	8032	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0033	8033	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0034	8039	2	0	0	0	2	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0035	8039	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0036	8039	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0037	8050	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0038	8050	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0039	8050	2	0	1	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0040	8050	2	0	0	1	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0041	8052	2	0	1	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0042	8049	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0043	8048	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0044	8052	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0045	8042	2	0	1	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0046	8043	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0047	8039	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0048	8042	2	0	0	2	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0049	8040	2	0	0	0	0	2	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0050	8039	2	0	0	0	1	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0051	8042	2	0	0	1	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0052	8034	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0053	8035	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0054	8032	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0055	8032	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0056	8032	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0057	8029	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0058	8030	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0059	8032	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0060	8029	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0061	8077	1	0	1	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0062	8079	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0063	8029	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0064	8029	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0065	8029	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0066	8028	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0067	8033	1	0	0	0	1	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0068	8034	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0069	8029	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0070	8030	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0071	8031	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0072	8021	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0073	8033	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0074	8032	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0075	8032	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357