JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RC3H1_chr1_173926084_174027357	0/0	t0126	8040	1	0	1	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0127	8039	1	0	0	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0128	8042	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0129	8041	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0130	8042	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0131	8041	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0132	8040	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0133	8043	1	0	0	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0134	8039	1	0	0	0	1	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0135	8030	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	t0136	8032	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H2_chr9_122839556_122910359	0/1	t0001	5391	128	29	28	36	12	22	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0002	5391	103	21	21	57	1	3	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0003	5391	21	1	9	5	1	5	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0004	5391	15	10	4	0	1	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0005	5391	9	9	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0006	5391	6	0	0	6	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0007	5391	5	0	0	5	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0008	5391	3	0	0	3	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0009	5392	3	3	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0010	5391	3	3	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0011	5391	3	3	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0012	5392	2	0	0	2	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0013	5391	2	0	0	2	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0014	5391	2	0	0	0	0	2	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0015	5391	1	1	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0016	5392	1	0	0	1	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0017	5391	1	0	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0018	5391	1	0	0	1	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0019	5391	1	0	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0020	5391	1	1	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0021	5391	1	0	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0022	5391	1	1	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0023	5391	1	0	0	0	1	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0024	5391	1	0	1	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0025	5391	1	0	0	0	0	1	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0026	5391	1	0	0	0	0	1	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	1/0	t0027	5389	1	0	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0028	5391	1	1	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	t0029	5391	1	1	0	0	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RCAN1_chr21_34511442_34620113	1/0	t0001	1745	314	69	61	138	10	35	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0002	1745	19	6	3	0	2	8	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/1	t0003	1745	14	0	3	9	0	1	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0004	1745	12	0	0	12	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0005	1745	7	6	1	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0006	1745	3	3	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0007	1745	2	2	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0008	1745	2	2	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0009	1745	1	1	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0010	1745	1	1	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113