JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RCAN1_chr21_34511442_34620113	0/0	t0011	1745	1	1	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0012	1745	1	0	0	1	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	t0013	1745	1	1	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN2_chr6_46215736_46496449	0/0	t0001	2685	65	11	21	22	5	6	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0002	2685	27	2	5	17	2	1	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0003	2685	18	3	4	5	1	5	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0004	2685	13	13	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0005	2685	12	12	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0006	2685	4	3	1	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0007	2685	2	2	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0008	2685	2	1	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0009	2685	2	2	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0010	2685	1	0	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0011	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0012	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0013	2685	1	0	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0014	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0015	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0016	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0017	2685	1	0	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0018	2685	1	0	1	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0019	2685	1	0	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0020	2685	1	0	0	1	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0021	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	t0022	2685	1	1	0	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN3_chr1_24497836_24546040	0/0	t0001	6138	108	11	22	61	2	12	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/1	t0002	6137	64	2	18	28	6	9	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0003	6137	32	16	4	6	3	3	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0004	6138	11	6	3	0	0	2	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0005	6137	10	0	0	10	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0006	6137	9	1	0	8	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0007	6140	8	8	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0008	6139	7	0	1	1	1	4	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0009	6138	7	7	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0010	6138	7	4	3	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0011	6141	5	5	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0012	6139	5	4	0	0	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0013	6138	4	0	0	4	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0014	6136	4	0	3	0	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0015	6138	3	0	0	2	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0016	6137	3	0	0	2	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0017	6131	3	3	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0018	6140	2	2	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0019	6136	2	1	0	1	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0020	6136	2	0	1	0	0	1	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0021	6137	2	0	2	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0022	6138	2	0	1	0	1	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0023	6139	2	2	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0024	6141	2	2	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	t0025	6141	1	1	0	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040