Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AXIN1_chr16_282440_357723	1/0	t0029	1119	1	0	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0030	1118	1	0	0	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0031	1118	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0032	1119	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0033	1114	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0034	1119	1	0	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0035	1116	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0036	1118	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0037	1115	1	0	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0038	1115	1	0	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0039	1116	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0040	1118	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0041	1115	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0042	1118	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0043	1118	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0044	1119	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0045	1115	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0046	1118	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0047	1118	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0048	1118	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	t0049	1119	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN2_chr17_65523563_65566648	1/0	t0001	1729	227	47	38	114	6	21	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0002	1729	109	15	26	46	6	16	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/1	t0003	1729	21	1	7	3	2	7	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0004	1729	8	8	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0005	1730	5	4	1	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0006	1730	4	0	1	3	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0007	1729	3	3	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0008	1729	3	3	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0009	1729	2	0	0	2	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0010	1729	2	0	0	0	0	2	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0011	1730	2	2	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0012	1729	2	0	0	2	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0013	1729	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0014	1729	1	0	0	0	0	1	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0015	1729	1	0	1	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0016	1729	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0017	1729	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0018	1729	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0019	1730	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0020	1730	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0021	1729	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0022	1729	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0023	1729	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0024	1729	1	0	0	0	0	1	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0025	1729	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	t0026	1730	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXL_chr19_41214223_41266766	1/0	t0001	2033	32	2	7	20	1	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0002	2027	28	5	7	14	1	1	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	t0003	2027	20	3	1	15	1	0	copy fasta	AXL	chr19	41214223	41266766